/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * Copyright by the Board of Trustees of the University of Illinois.         *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF.  The full HDF copyright notice, including       *
 * terms governing use, modification, and redistribution, is contained in    *
 * the COPYING file, which can be found at the root of the source code       *
 * distribution tree, or in https://support.hdfgroup.org/ftp/HDF/releases/.  *
 * If you do not have access to either file, you may request a copy from     *
 * help@hdfgroup.org.                                                        *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

#include <stdlib.h>
#include <string.h>

#include "hdf.h"
#include "mfhdf.h"
#include "vg_priv.h"
#include "hrepack.h"
#include "hrepack_utils.h"
#include "hrepack_parse.h"
#include "hrepack_opttable.h"
#include "hrepack_sds.h"
#include "hrepack_gr.h"
#include "hrepack_vs.h"
#include "hrepack_an.h"
#include "hrepack_vg.h"
#include "hrepack_dim.h"

int list_vg(int32 infile_id, int32 outfile_id, int32 sd_id, int32 sd_out, int32 gr_id, int32 gr_out,
            list_table_t *list_tbl, dim_table_t *td1, dim_table_t *td2, options_t *options);
int list_gr(int32 infile_id, int32 outfile_id, int32 gr_id, int32 gr_out, list_table_t *list_tbl,
            options_t *options);
int list_sds(int32 infile_id, int32 outfile_id, int32 sd_id, int32 sd_out, list_table_t *list_tbl,
             dim_table_t *td1, dim_table_t *td2, options_t *options);
int list_vs(int32 infile_id, int32 outfile_id, list_table_t *list_tbl, options_t *options);
int list_glb(int32 infile_id, int32 outfile_id, int32 sd_id, int32 sd_out, int32 gr_id, int32 gr_out,
             list_table_t *list_tbl, options_t *options);
int list_pal(const char *infname, const char *outfname, list_table_t *list_tbl, options_t *options);
int list_an(int32 infile_id, int32 outfile_id, options_t *options);

/*-------------------------------------------------------------------------
 * Function: list
 *
 * Purpose: locate all HDF objects in the file and compress them using options
 *
 * Return: SUCCEED, FAIL
 *
 * Description:
 *
 * A main loop is used to locate all the objects in the file. The algorithm used is:
 * 1) Obtain the number of lone vgroups in the HDF file, i.e., vgroups that are at
 *     the top of the grouping hierarchy, in a file.
 * 2) Do a loop for each one of these groups. In each iteration a table is updated
 *    with the tag/reference pair of an object.
 *    2.1) Obtain the pairs of tag/references for the group
 *    2.2) Switch between the tag of the current object. Four cases are possible:
 *         1) Object is a group: recursively repeat the process (obtain the pairs of
 *            tag/references for this group and do another tag switch).
 *            If the Vgroup has not been visited
 *             Add the object to the table and continue recursion
 *            else
 *             Open it, create the insertion into its parent and exit the recursion.
 *         2) Object is a dataset: Add the object to the table.
 *         3) Object is an image: Add the object to the table.
 *         4) Object is a vdata: Add the object to the table.
 * 3) Read all the HDF interfaces (SDS, GR and VS), checking for objects that are
 *    already in the table (meaning they belong to a previous inspected group,
 *    and should not be added).  These objects belong to a root group.
 * 4) Read all global attributes and annotations.
 *
 * Modification: January 15, 2015 - JIRA issue HDFFR-1428
 *	The output file contains a vgroup of class RIG0.0 even though the input
 *	file does not contain any GR elements, such as raster images or GR file
 *	attribute.  That is because GRstart is called on the output file
 *	regardless of whether there are any GR items in the input file.  Hrepack
 *	will be reviewed and revised for correctness and efficiency (JIRA issue
 *	HDFFR-1395.)  However, in this release, 4.2.11, an immediate solution is
 *	applied to eliminate the unnecessary RIG0.0 vgroup.  The input file is
 *	checked for GR elements, before any GR activity is invoked on the
 *	output file. -BMR
 *
 *-------------------------------------------------------------------------
 */
int
list_main(const char *infname, const char *outfname, options_t *options)
{
    list_table_t *list_tbl = NULL; /* list of objects */
    dim_table_t  *td1      = NULL; /* dimensions */
    dim_table_t  *td2      = NULL; /* dimensions */
    int32         sd_id    = -1,   /* SD interface identifier */
        sd_out             = -1,   /* SD interface identifier */
        gr_id              = -1,   /* GR interface identifier */
        gr_out             = -1,   /* GR interface identifier */
        infile_id          = -1,   /* input file identifier */
        outfile_id         = -1;   /* output file identifier */
    int32 n_rimages,               /* number of raster images in the file */
        n_file_attrs;              /* number of file attributes */
    int has_GRelems = 0;           /* set to 1 when there are GR images or */
                                   /* attributes in the file (HDFFR-1428) */
    int         i;
    const char *err;

    /*-------------------------------------------------------------------------
     * initialize tables
     *-------------------------------------------------------------------------
     */

    list_table_init(&list_tbl);
    dim_table_init(&td1);
    dim_table_init(&td2);

    /*-------------------------------------------------------------------------
     * open the input file for read and initialize interfaces
     *-------------------------------------------------------------------------
     */

    if ((infile_id = Hopen(infname, DFACC_READ, (int16)0)) == FAIL) {
        printf("Cannot open file <%s>\n", infname);
        goto out;
    }
    if ((sd_id = SDstart(infname, DFACC_READ)) == FAIL) {
        printf("Could not start SD for <%s>\n", infname);
        goto out;
    }
    if ((gr_id = GRstart(infile_id)) == FAIL) {
        printf("Could not start GR for <%s>\n", infname);
        goto out;
    }

    /*-------------------------------------------------------------------------
     * set flag to indicate whether the input file contains any GR elements
     *-------------------------------------------------------------------------
     */
    if (GRfileinfo(gr_id, &n_rimages, &n_file_attrs) == FAIL) {
        printf("Could not get info for GR\n");
        goto out;
    }
    if (n_rimages > 0 || n_file_attrs > 0)
        has_GRelems = 1;

    /*-------------------------------------------------------------------------
     * create the output file and initialize interfaces
     *-------------------------------------------------------------------------
     */

    if (options->trip == 1) {
        if ((outfile_id = Hopen(outfname, DFACC_CREATE, (int16)0)) == FAIL) {
            printf("Cannot create file <%s>\n", outfname);
            goto out;
        }
        if ((sd_out = SDstart(outfname, DFACC_WRITE)) == FAIL) {
            printf("Could not start GR for <%s>\n", outfname);
            goto out;
        }

        if (has_GRelems)
            if ((gr_out = GRstart(outfile_id)) == FAIL) {
                printf("Could not start GR for <%s>\n", outfname);
                goto out;
            }
    } /* options->trip==1 */

    if (options->verbose && options->trip == 0)
        printf("Building list of objects in %s...\n", infname);

    /*-------------------------------------------------------------------------
     * iterate thru HDF interfaces
     *-------------------------------------------------------------------------
     */

    if (options->verbose) {
        printf("-----------------------------------------------\n");
        printf(" Chunk   Filter(compression) Name\n");
        printf("-----------------------------------------------\n");
    }

    if (list_vg(infile_id, outfile_id, sd_id, sd_out, gr_id, gr_out, list_tbl, td1, td2, options) < 0)
        goto out;

    /* Only process GR interface if there is any GR elements in the file */
    /* Design note: consider using the same approach for the SD API during the
       improvement of hrepack, HDFFR-1395 */
    if (has_GRelems)
        if (list_gr(infile_id, outfile_id, gr_id, gr_out, list_tbl, options) < 0)
            goto out;
    if (list_sds(infile_id, outfile_id, sd_id, sd_out, list_tbl, td1, td2, options) < 0)
        goto out;
    if (list_vs(infile_id, outfile_id, list_tbl, options) < 0)
        goto out;
    if (list_glb(infile_id, outfile_id, sd_id, sd_out, gr_id, gr_out, list_tbl, options) < 0)
        goto out;
    if (list_pal(infname, outfname, list_tbl, options) < 0)
        goto out;
    if (list_an(infile_id, outfile_id, options) < 0)
        goto out;

    if (options->trip == 1) {
        match_dim(sd_id, sd_out, td1, td2, options);
    }

    /*-------------------------------------------------------------------------
     * check for objects in the file table:
     *   1) the input object names are present in the file
     *   2) they are valid objects (SDS or GR)
     * check only if selected objects are given (all==0)
     *-------------------------------------------------------------------------
     */

    if (options->trip == 0) {
        if (options->verbose)
            printf("Searching for objects to modify...\n");

        for (i = 0; i < options->op_tbl->nelems; i++) {
            char *obj_name = options->op_tbl->objs[i].objpath;
            if (options->verbose)
                printf(PFORMAT1, "", "", obj_name);

            /* the input object names are present in the file and are valid */
            err = list_table_check(list_tbl, obj_name);
            if (err != NULL) {
                printf("\nError: <%s> %s in file <%s>. Exiting...\n", obj_name, err, infname);
                goto out;
            }
            if (options->verbose)
                printf("...Found\n");
        }
    }

    /*-------------------------------------------------------------------------
     * close interfaces
     *-------------------------------------------------------------------------
     */
    if (GRend(gr_id) == FAIL) {
        printf("Failed to close GR interface <%s>\n", infname);
        goto out;
    }
    gr_id = -1;
    if (SDend(sd_id) == FAIL) {
        printf("Failed to close file <%s>\n", infname);
        goto out;
    }
    sd_id = -1;
    if (Hclose(infile_id) == FAIL) {
        printf("Failed to close file <%s>\n", infname);
        goto out;
    }
    infile_id = -1;

    if (options->trip == 1) {
        if (has_GRelems)
            if (GRend(gr_out) == FAIL)
                printf("Failed to close GR interface <%s>\n", outfname);
        if (SDend(sd_out) == FAIL)
            printf("Failed to close file <%s>\n", outfname);
        if (Hclose(outfile_id) == FAIL)
            printf("Failed to close file <%s>\n", outfname);
    }

    /*-------------------------------------------------------------------------
     * free tables
     *-------------------------------------------------------------------------
     */

    list_table_free(list_tbl);
    dim_table_free(td1);
    dim_table_free(td2);

    return SUCCEED;

out:

    if (list_tbl != NULL)
        list_table_free(list_tbl);
    if (td1 != NULL)
        dim_table_free(td1);
    if (td2 != NULL)
        dim_table_free(td2);
    if (gr_id != FAIL)
        GRend(gr_id);
    if (gr_out != FAIL)
        GRend(gr_out);
    if (sd_id != FAIL)
        SDend(sd_id);
    if (sd_out != FAIL)
        SDend(sd_out);
    if (infile_id != FAIL)
        Hclose(infile_id);
    if (outfile_id != FAIL)
        Hclose(outfile_id);

    return FAIL;
}

/*-------------------------------------------------------------------------
 * Function: list_vg
 *
 * Purpose: locate all objects in the file under a group hierarchy
 *
 * Return: SUCCEED, FAIL
 *
 *-------------------------------------------------------------------------
 */
int
list_vg(int32 infile_id, int32 outfile_id, int32 sd_id, int32 sd_out, int32 gr_id, int32 gr_out,
        list_table_t *list_tbl, dim_table_t *td1, dim_table_t *td2, options_t *options)
{

    int32  vg_id  = -1;          /* vgroup identifier */
    int32  nlones = 0;           /* number of lone vgroups */
    int32  ntagrefs;             /* number of tag/ref pairs in a vgroup */
    int32 *ref_array     = NULL; /* buffer to hold the ref numbers of lone vgroups   */
    int32 *tags          = NULL; /* buffer to hold the tag numbers of vgroups   */
    int32 *refs          = NULL; /* buffer to hold the ref numbers of vgroups   */
    int32  vgroup_id_out = -1;   /* vgroup identifier */
    int32  tag_vg;
    int32  ref_vg;
    char  *vg_name  = NULL;
    char  *vg_class = NULL;
    int32  i;

    /*-------------------------------------------------------------------------
     * initialize the V interface
     *-------------------------------------------------------------------------
     */

    if (Vstart(infile_id) == FAIL) {
        return FAIL;
    }

    if (options->trip == 1) {
        if (Vstart(outfile_id) == FAIL) {
            return FAIL;
        }
    }

    /*-------------------------------------------------------------------------
     * get and print the names and class names of all the lone vgroups.
     * first, call Vlone with nlones set to 0 to get the number of
     * lone vgroups in the file, but not to get their reference numbers.
     *-------------------------------------------------------------------------
     */
    if ((nlones = Vlone(infile_id, NULL, nlones)) == FAIL)
        goto out;

    if (nlones > 0) {
        /*
         * use the nlones returned to allocate sufficient space for the
         * buffer ref_array to hold the reference numbers of all lone vgroups,
         */
        ref_array = (int32 *)malloc(sizeof(int32) * (size_t)nlones);
        if (ref_array == NULL) {
            printf("Not enough memory!\n");
            exit(-1);
        }

        /*
         * and call Vlone again to retrieve the reference numbers into
         * the buffer ref_array.
         */
        if ((nlones = Vlone(infile_id, ref_array, nlones)) == FAIL)
            goto out;

        /*
         * iterate through each lone vgroup.
         */
        for (i = 0; i < nlones; i++) {

            int32 ref = ref_array[i];

            /*
             * attach to the current vgroup then get its
             * name and class. note: the current vgroup must be detached before
             * moving to the next.
             */
            if ((vg_id = Vattach(infile_id, ref, "r")) == FAIL) {
                printf("Error: Could not attach group with ref <%d>\n", ref);
                goto out;
            }

            /* Get vgroup's name */
            vg_name = vgetvgname(vg_id);
            if (!vg_name) {
                printf("Error: Could not get name for group with ref <%d>\n", ref);
                goto out;
            }

            /* Get vgroup's class */
            vg_class = vgetvgclass(vg_id);
            if (!vg_class) {
                printf("Error: Could not get class name for vgroup with ref <%d>\n", ref);
                goto out;
            }

            /* ignore reserved HDF groups/vdatas */
            if (is_reserved(vg_class)) {
                if (Vdetach(vg_id) == FAIL) {
                    printf("Could not detach group\n");
                    goto out;
                }
                HDfreenclear(vg_name);
                HDfreenclear(vg_class);
                continue;
            }
            if (strcmp(vg_name, GR_NAME) == 0) {
                if (Vdetach(vg_id) == FAIL) {
                    printf("Could not detach group\n");
                    goto out;
                }
                HDfreenclear(vg_name);
                HDfreenclear(vg_class);
                continue;
            }

            /* get ref, tag */
            if ((ref_vg = VQueryref(vg_id)) == FAIL) {
                printf("Failed to get ref for <%s>\n", vg_name);
                goto out;
            }
            if ((tag_vg = VQuerytag(vg_id)) == FAIL) {
                printf("Failed to get tag for <%s>\n", vg_name);
                goto out;
            }

            /*-------------------------------------------------------------------------
             * add object to table
             *-------------------------------------------------------------------------
             */
            list_table_add(list_tbl, tag_vg, ref_vg, vg_name);

            if (options->verbose)
                printf(PFORMAT, "", "", "", vg_name);

            if (options->trip == 1) {

                /*
                 * create the group in the output file.  the vgroup reference number is set
                 * to -1 for creating and the access mode is "w" for writing
                 */
                vgroup_id_out = Vattach(outfile_id, -1, "w");
                if (Vsetname(vgroup_id_out, vg_name) == FAIL) {
                    printf("Error: Could not create group <%s>\n", vg_name);
                    goto out;
                }
                if (Vsetclass(vgroup_id_out, vg_class) == FAIL) {
                    printf("Error: Could not create group <%s>\n", vg_name);
                    goto out;
                }

                if (copy_vgroup_attrs(vg_id, vgroup_id_out, vg_name, options) < 0)
                    goto out;
                if (copy_vg_an(infile_id, outfile_id, vg_id, vgroup_id_out, vg_name, options) < 0)
                    goto out;
            }

            /* insert objects for this group */
            ntagrefs = Vntagrefs(vg_id);
            if (ntagrefs > 0) {
                tags = (int32 *)malloc(sizeof(int32) * (size_t)ntagrefs);
                if (tags == NULL) {
                    printf("Not enough memory!\n");
                    exit(-1);
                }
                refs = (int32 *)malloc(sizeof(int32) * (size_t)ntagrefs);
                if (refs == NULL) {
                    printf("Not enough memory!\n");
                    exit(-1);
                }
                if (Vgettagrefs(vg_id, tags, refs, ntagrefs) < 0)
                    goto out;

                if (vgroup_insert(infile_id, outfile_id, sd_id, sd_out, gr_id, gr_out, vgroup_id_out, vg_name,
                                  tags, refs, ntagrefs, list_tbl, td1, td2, options) < 0) {
                    goto out;
                }

                HDfreenclear(tags);
                HDfreenclear(refs);
            }

            if (Vdetach(vg_id) == FAIL) {
                printf("Error: Could not detach group <%s>\n", vg_name);
                goto out;
            }
            if (options->trip == 1) {
                if (Vdetach(vgroup_id_out) == FAIL) {
                    printf("Error: Could not detach group <%s>\n", vg_name);
                    goto out;
                }
            }

            HDfreenclear(vg_class);
            HDfreenclear(vg_name);
        } /* for nlones */

        /* free the space allocated */
        HDfreenclear(ref_array);

    } /* if nlones */

    /*-------------------------------------------------------------------------
     * terminate access to the V interface
     *-------------------------------------------------------------------------
     */

    if (Vend(infile_id) == FAIL) {
        printf("Error: Could not end infile group interface\n");
        return FAIL;
    }
    if (options->trip == 1) {
        if (Vend(outfile_id) == FAIL) {
            printf("Error: Could not end outfile group interface\n");
            return FAIL;
        }
    }

    return SUCCEED;

out:
    if (vg_id != -1)
        Vdetach(vg_id);
    if (vgroup_id_out != -1)
        Vdetach(vgroup_id_out);
    Vend(infile_id);
    if (options->trip == 1)
        Vend(outfile_id);

    /* free the space allocated */
    free(vg_class);
    free(vg_name);
    free(ref_array);
    free(tags);
    free(refs);

    return FAIL;
}

/*-------------------------------------------------------------------------
 * Function: vgroup_insert
 *
 * Purpose: recursive function to locate objects in vgroups
 *
 * Return: SUCCEED, FAIL
 *
 *-------------------------------------------------------------------------
 */
int
vgroup_insert(int32 infile_id, int32 outfile_id, int32 sd_id, /* SD interface identifier */
              int32         sd_out,                           /* SD interface identifier */
              int32         gr_id,                            /* GR interface identifier */
              int32         gr_out,                           /* GR interface identifier */
              int32         vgroup_id_out_par,                /* output parent group ID */
              char         *path_name,                        /* absolute path for input group name */
              int32        *in_tags,                          /* tag list for parent group */
              int32        *in_refs,                          /* ref list for parent group */
              int           npairs,                           /* number tag/ref pairs for parent group */
              list_table_t *list_tbl, dim_table_t *td1, dim_table_t *td2, options_t *options)
{
    int32  vg_id = -1;           /* vgroup identifier for opened group in input */
    int32  ntagrefs;             /* number of tag/ref pairs in a vgroup */
    int32 *tags          = NULL; /* buffer to hold the tag numbers of vgroups   */
    int32 *refs          = NULL; /* buffer to hold the ref numbers of vgroups   */
    int32  vgroup_id_out = -1;   /* vgroup identifier for the created group in output */
    char  *vg_name       = NULL;
    char  *vg_class      = NULL;
    char  *path          = NULL;
    int    visited;
    int32  tag;
    int32  ref;
    int    i;

    for (i = 0; i < npairs; i++) {
        tag = in_tags[i];
        ref = in_refs[i];

        switch (tag) { /*-------------------------------------------------------------------------
                        * DFTAG_VG
                        *-------------------------------------------------------------------------
                        */
            case DFTAG_VG:

                visited = list_table_search(list_tbl, DFTAG_VG, ref);

                /*-------------------------------------------------------------------------
                 * open input
                 *-------------------------------------------------------------------------
                 */

                if ((vg_id = Vattach(infile_id, ref, "r")) == FAIL) {
                    printf("Error: Could not attach group with ref <%d>\n", ref);
                    goto out;
                }

                /* Get vgroup's name */
                vg_name = vgetvgname(vg_id);
                if (!vg_name) {
                    printf("Error: Could not get name for vgroup with ref <%d>\n", ref);
                    goto out;
                }

                /* Get vgroup's class name */
                vg_class = vgetvgclass(vg_id);
                if (!vg_class) {
                    printf("Error: Could not get class name for vgroup with ref <%d>\n", ref);
                    goto out;
                }

                /* ignore reserved HDF groups/vdatas */
                if (is_reserved(vg_class)) {
                    if (Vdetach(vg_id) == FAIL) {
                        printf("Could not detach group\n");
                        goto out;
                    }
                    HDfreenclear(vg_name);
                    HDfreenclear(vg_class);
                    continue;
                }
                if (strcmp(vg_name, GR_NAME) == 0) {
                    if (Vdetach(vg_id) == FAIL) {
                        printf("Could not detach group\n");
                        goto out;
                    }
                    vg_id = -1;
                    HDfreenclear(vg_name);
                    HDfreenclear(vg_class);
                    continue;
                }

                /*-------------------------------------------------------------------------
                 * create the group in output or create the link
                 *-------------------------------------------------------------------------
                 */
                if (options->trip == 1) {
                    if (visited < 0) {
                        /*
                         * create the group in the output file.  the vgroup reference number
                         * is set to -1 for creating and the access mode is "w" for writing
                         */
                        vgroup_id_out = Vattach(outfile_id, -1, "w");
                        if (Vsetname(vgroup_id_out, vg_name) == FAIL) {
                            printf("Error: Could not create group <%s>\n", vg_name);
                            goto out;
                        }
                        if (Vsetclass(vgroup_id_out, vg_class) == FAIL) {
                            printf("Error: Could not create group <%s>\n", vg_name);
                            goto out;
                        }

                        if (copy_vgroup_attrs(vg_id, vgroup_id_out, path, options) < 0)
                            goto out;
                        if (copy_vg_an(infile_id, outfile_id, vg_id, vgroup_id_out, path, options) < 0)
                            goto out;
                    }

                    else {
                        /* open previously visited group */
                        vgroup_id_out = Vattach(outfile_id, ref, "r");
                    }

                    /* insert the created (or opened) vgroup into its parent */
                    if (Vinsert(vgroup_id_out_par, vgroup_id_out) == FAIL) {
                        printf("Could not insert group <%s>\n", vg_name);
                        goto out;
                    }

                } /* create the group in output or create the link */

                /*-------------------------------------------------------------------------
                 * if group not visited, add to table and check for more tag/ref pairs
                 *-------------------------------------------------------------------------
                 */

                /* check if already visited */
                if (visited < 0) {

                    /* initialize path */
                    path = get_path(path_name, vg_name);

                    /* add object to table */
                    list_table_add(list_tbl, tag, ref, path);

                    if (options->verbose)
                        printf(PFORMAT, "", "", "", path);

                    if (options->trip == 0) {
                        /*we must go to other groups always */
                    }

                    /* insert objects for this group */
                    if ((ntagrefs = Vntagrefs(vg_id)) == FAIL)
                        goto out;
                    if (ntagrefs > 0) {
                        tags = (int32 *)malloc(sizeof(int32) * (size_t)ntagrefs);
                        if (tags == NULL) {
                            printf("Not enough memory!\n");
                            exit(-1);
                        }
                        refs = (int32 *)malloc(sizeof(int32) * (size_t)ntagrefs);
                        if (refs == NULL) {
                            printf("Not enough memory!\n");
                            exit(-1);
                        }
                        if (Vgettagrefs(vg_id, tags, refs, ntagrefs) < 0)
                            goto out;
                        /* recurse */
                        if (vgroup_insert(infile_id, outfile_id, sd_id, sd_out, gr_id, gr_out, vgroup_id_out,
                                          path, tags, refs, ntagrefs, list_tbl, td1, td2, options) < 0) {
                            goto out;
                        }
                        HDfreenclear(tags);
                        HDfreenclear(refs);
                    } /* ntagrefs > 0 */

                    HDfreenclear(path);

                } /* check if already visited */

                if (Vdetach(vg_id) == FAIL) {
                    printf("Error: Could not detach group <%s>\n", vg_name);
                    goto out;
                }
                if (options->trip == 1) {
                    if (Vdetach(vgroup_id_out) == FAIL) {
                        printf("Error: Could not detach group <%s>\n", vg_name);
                        goto out;
                    }
                }
                HDfreenclear(vg_name);
                HDfreenclear(vg_class);

                break;

                /*-------------------------------------------------------------------------
                 * SDS
                 *-------------------------------------------------------------------------
                 */

            case DFTAG_SD:  /* Scientific Data */
            case DFTAG_SDG: /* Scientific Data Group */
            case DFTAG_NDG: /* Numeric Data Group */
                /* copy dataset */
                if (copy_sds(sd_id, sd_out, tag, ref, vgroup_id_out_par, path_name, options, list_tbl, td1,
                             td2, infile_id, outfile_id) < 0) {
                    goto out;
                }

                break;

                /*-------------------------------------------------------------------------
                 * Image
                 *-------------------------------------------------------------------------
                 */

            case DFTAG_RI:  /* Raster Image */
            case DFTAG_CI:  /* Compressed Image */
            case DFTAG_RIG: /* Raster Image Group */
            case DFTAG_RI8: /* Raster-8 image */
            case DFTAG_CI8: /* RLE compressed 8-bit image */
            case DFTAG_II8: /* IMCOMP compressed 8-bit image */
                /* copy GR  */
                if (copy_gr(infile_id, outfile_id, gr_id, gr_out, tag, ref, vgroup_id_out_par, path_name,
                            options, list_tbl) < 0) {
                    goto out;
                }
                break;

                /*-------------------------------------------------------------------------
                 * Vdata
                 *-------------------------------------------------------------------------
                 */

            case DFTAG_VH: /* Vdata Header */
                if (copy_vs(infile_id, outfile_id, tag, ref, vgroup_id_out_par, path_name, options, list_tbl,
                            0) < 0) {
                    goto out;
                }
                break;
        } /* switch */
        HDfreenclear(vg_name);
    } /* i */
    HDfreenclear(vg_class);
    HDfreenclear(vg_name);

    return SUCCEED;

out:
    if (vg_id != -1)
        Vdetach(vg_id);
    if (vgroup_id_out != -1)
        Vdetach(vgroup_id_out);

    free(vg_class);
    free(vg_name);
    free(tags);
    free(refs);
    free(path);

    return FAIL;
}

/*-------------------------------------------------------------------------
 * Function: list_gr
 *
 * Purpose: get top level GR image list
 *
 * Return: SUCCEED, FAIL
 *
 *-------------------------------------------------------------------------
 */
int
list_gr(int32 infile_id, int32 outfile_id, int32 gr_id, /* GR interface identifier */
        int32         gr_out,                           /* GR interface identifier */
        list_table_t *list_tbl, options_t *options)
{
    int32 ri_id = -1,          /* raster image identifier */
        n_rimages,             /* number of raster images in the file */
        n_file_attrs,          /* number of file attributes */
        ri_index,              /* index of a image */
        gr_ref,                /* reference number of the GR image */
        dim_sizes[2],          /* dimensions of an image */
        n_comps,               /* number of components an image contains */
        interlace_mode,        /* interlace mode of an image */
        data_type,             /* number type of an image */
        n_attrs;               /* number of attributes belong to an image */
    char name[H4_MAX_GR_NAME]; /* name of an image */

    /* determine the contents of the file */
    if (GRfileinfo(gr_id, &n_rimages, &n_file_attrs) == FAIL) {
        printf("Could not get info for GR\n");
        return FAIL;
    }

    for (ri_index = 0; ri_index < n_rimages; ri_index++) {
        if ((ri_id = GRselect(gr_id, ri_index)) == FAIL) {
            printf("Could not open image %d\n", ri_index);
            goto out;
        }
        if (GRgetiminfo(ri_id, name, &n_comps, &data_type, &interlace_mode, dim_sizes, &n_attrs) == FAIL) {
            printf("Could not get GR info\n");
            goto out;
        }

        if ((gr_ref = GRidtoref(ri_id)) == FAIL) {
            printf("Could not get ref = %d\n", gr_ref);
            goto out;
        }

        /* check if already inserted in Vgroup; search all image tags */
        if (list_table_search(list_tbl, DFTAG_RI, gr_ref) >= 0 ||
            list_table_search(list_tbl, DFTAG_CI, gr_ref) >= 0 ||
            list_table_search(list_tbl, DFTAG_RIG, gr_ref) >= 0 ||
            list_table_search(list_tbl, DFTAG_RI8, gr_ref) >= 0 ||
            list_table_search(list_tbl, DFTAG_CI8, gr_ref) >= 0 ||
            list_table_search(list_tbl, DFTAG_II8, gr_ref) >= 0) {
            if (GRendaccess(ri_id) == FAIL) {
                printf("Could not close GR\n");
                return FAIL;
            }
            continue;
        }

        /* copy GR  */
        if (copy_gr(infile_id, outfile_id, gr_id, gr_out, DFTAG_RI, gr_ref, 0, NULL, options, list_tbl) < 0)
            goto out;

        /* terminate access to the current raster image */
        if (GRendaccess(ri_id) == FAIL) {
            printf("Could not end GR\n");
            return FAIL;
        }
    }

    return SUCCEED;

out:
    if (ri_id != -1)
        GRendaccess(ri_id);
    return FAIL;
}

/*-------------------------------------------------------------------------
 * Function: list_sds
 *
 * Purpose: get top level SDS
 *
 * Return: SUCCEED, FAIL
 *
 *-------------------------------------------------------------------------
 */
int
list_sds(int32 infile_id, int32 outfile_id, int32 sd_id, int32 sd_out, list_table_t *list_tbl,
         dim_table_t *td1, dim_table_t *td2, options_t *options)
{
    int32 sds_id = -1,              /* dataset identifier */
        n_datasets,                 /* number of datasets in the file */
        n_file_attrs,               /* number of file attributes */
        index,                      /* index of a dataset */
        sds_ref,                    /* reference number */
        dim_sizes[H4_MAX_VAR_DIMS], /* dimensions of an image */
        data_type,                  /* number type  */
        rank,                       /* rank */
        n_attrs;                    /* number of attributes */
    char name[H4_MAX_GR_NAME];      /* name of dataset */

    /* determine the number of data sets in the file and the number of file attributes */
    if (SDfileinfo(sd_id, &n_datasets, &n_file_attrs) == FAIL) {
        printf("Could not get SDS info\n");
        goto out;
    }

    for (index = 0; index < n_datasets; index++) {
        if ((sds_id = SDselect(sd_id, index)) == FAIL)
            goto out;
        if (SDgetinfo(sds_id, name, &rank, dim_sizes, &data_type, &n_attrs) == FAIL)
            goto out;
        if ((sds_ref = SDidtoref(sds_id)) == FAIL)
            goto out;

        /* check if already inserted in Vgroup; search all SDS tags */
        if (list_table_search(list_tbl, DFTAG_SD, sds_ref) >= 0 ||
            list_table_search(list_tbl, DFTAG_SDG, sds_ref) >= 0 ||
            list_table_search(list_tbl, DFTAG_NDG, sds_ref) >= 0) {
            if (SDendaccess(sds_id) == FAIL) {
                printf("Could not close SDS\n");
                goto out;
            }
            sds_id = -1;
            continue;
        }

        /* copy SDS  */
        if (copy_sds(sd_id, sd_out, TAG_GRP_DSET, sds_ref, 0, NULL, options, list_tbl, td1, td2, infile_id,
                     outfile_id) < 0)
            goto out;

        /* terminate access to the current dataset */
        SDendaccess(sds_id);
        sds_id = -1;
    }
    return SUCCEED;

out:
    if (sds_id != -1)
        SDendaccess(sds_id);

    return FAIL;
}

/*-------------------------------------------------------------------------
 * Function: list_vs
 *
 * Purpose: get top level VS
 *
 * Return: SUCCEED, FAIL
 *
 *-------------------------------------------------------------------------
 */
int
list_vs(int32 infile_id, int32 outfile_id, list_table_t *list_tbl, options_t *options)
{
    int32 nlones   = 0,    /* number of lone vdatas */
        *ref_array = NULL, /* buffer to hold the ref numbers of lone vdatas */
        ref;               /* temporary ref number  */
    int i;

    /*-------------------------------------------------------------------------
     * initialize the V interface
     *-------------------------------------------------------------------------
     */

    if (Vstart(infile_id) == FAIL)
        return FAIL;

    if (options->trip == 1) {
        if (Vstart(outfile_id) == FAIL) {
            Vend(infile_id);
            return FAIL;
        }
    }

    /*-------------------------------------------------------------------------
     * get the names and class names of all the lone vdatas
     * first, call Vlone with nlones set to 0 to get the number of lone vdatas
     * in the file
     *
     *-------------------------------------------------------------------------
     */
    if ((nlones = VSlone(infile_id, NULL, nlones)) == FAIL)
        goto out;

    if (nlones > 0) {
        /*
         * use the nlones returned to allocate sufficient space for the
         * buffer ref_array to hold the reference numbers of all lone vgroups,
         */
        ref_array = (int32 *)malloc(sizeof(int32) * (size_t)nlones);
        if (ref_array == NULL) {
            printf("Not enough memory!\n");
            exit(-1);
        }

        /*
         * and call VSlone again to retrieve the reference numbers into
         * the buffer ref_array.
         */
        if ((nlones = VSlone(infile_id, ref_array, nlones)) == FAIL)
            goto out;

        /*
         * iterate through each lone vdata.
         */
        for (i = 0; i < nlones; i++) {
            /*
             * attach to the current vdata then get its
             * name and class. note: the current vdata must be detached before
             * moving to the next.
             */
            ref = ref_array[i];

            /* check if already inserted in Vgroup, search with VS tag */
            if (list_table_search(list_tbl, DFTAG_VH, ref) >= 0) {
                continue;
            }

            /* copy VS */
            if (copy_vs(infile_id, outfile_id, DFTAG_VH, ref, 0, NULL, options, list_tbl, 1) < 0) {
                goto out;
            }

        } /* for */

        /* free the space allocated */
        HDfreenclear(ref_array);
    } /* if */

    /*-------------------------------------------------------------------------
     * terminate access to the V interface
     *-------------------------------------------------------------------------
     */
    if (Vend(infile_id) == FAIL) {
        printf("Error: Could not end Vdata interface\n");
        HDfreenclear(ref_array);
        return FAIL;
    }

    if (options->trip == 1) {
        if (Vend(outfile_id) == FAIL) {
            printf("Error: Could not end Vdata interface\n");
            HDfreenclear(ref_array);
            return FAIL;
        }
    }

    return SUCCEED;

out:
    Vend(infile_id);
    if (options->trip == 1)
        Vend(outfile_id);

    /* free the space allocated */
    free(ref_array);

    return FAIL;
}

/*-------------------------------------------------------------------------
 * Function: list_glb
 *
 * Purpose: list/copy global SDS attributes, global GR attributes
 *
 * Return: SUCCEED, FAIL
 *
 *-------------------------------------------------------------------------
 */
int
list_glb(int32 infile_id, int32 outfile_id, int32 sd_id, int32 sd_out, int32 gr_id, int32 gr_out,
         list_table_t *list_tbl, options_t *options)
{
    int32 n_datasets, /* number of datasets in the file */
        n_file_attrs; /* number of file attributes */

    (void)infile_id;
    (void)outfile_id;
    (void)list_tbl;

    if (options->trip == 0) {
        return SUCCEED;
    }

    /*-------------------------------------------------------------------------
     * copy SDS global attributes
     *-------------------------------------------------------------------------
     */

    /* determine the number of data sets in the file and the number of file attributes */
    if (SDfileinfo(sd_id, &n_datasets, &n_file_attrs) == FAIL) {
        printf("Could not get SDS info\n");
        return FAIL;
    }

    if (copy_sds_attrs(sd_id, sd_out, n_file_attrs, options) < 0)
        return FAIL;

    /*-------------------------------------------------------------------------
     * copy GR global attributes
     *-------------------------------------------------------------------------
     */

    /* determine the number of data sets in the file and the number of file attributes */
    if (GRfileinfo(gr_id, &n_datasets, &n_file_attrs) == FAIL) {
        printf("Could not get GR info\n");
        return FAIL;
    }
    if (copy_gr_attrs(gr_id, gr_out, n_file_attrs, options) < 0)
        return FAIL;

    return SUCCEED;
}

/*-------------------------------------------------------------------------
 * Function: list_an
 *
 * Purpose: list/copy AN FILE objects
 *
 * Return: SUCCEED, FAIL
 *
 *-------------------------------------------------------------------------
 */
int
list_an(int32 infile_id, int32 outfile_id, options_t *options)
{
    int32 an_id = -1,       /* AN interface identifier */
        ann_id  = -1,       /* an annotation identifier */
        ann_length,         /* length of the text in an annotation */
        an_out        = -1, /* AN interface identifier */
        file_label_id = -1, /* file label identifier */
        file_desc_id  = -1, /* file description identifier */
        n_file_labels, n_file_descs, n_data_labels, n_data_descs;
    char *ann_buf = NULL; /* buffer to hold the read annotation */
    int   i;              /* position of an annotation in all of the same type*/

    if (options->trip == 0) {
        return SUCCEED;
    }

    /* Initialize the AN interface  */
    an_id = ANstart(infile_id);
    if (an_id == FAIL)
        goto out;

    an_out = ANstart(outfile_id);
    if (an_out == FAIL)
        goto out;

    /*
     * Get the annotation information, e.g., the numbers of file labels, file
     * descriptions, data labels, and data descriptions.
     */
    if (ANfileinfo(an_id, &n_file_labels, &n_file_descs, &n_data_labels, &n_data_descs) == FAIL) {
        printf("Could not get AN info\n");
        goto out;
    }

    /*-------------------------------------------------------------------------
     * AN_FILE_LABEL
     *-------------------------------------------------------------------------
     */

    for (i = 0; i < n_file_labels; i++) {
        /* Get the identifier of the current data label */
        if ((ann_id = ANselect(an_id, i, AN_FILE_LABEL)) == FAIL) {
            printf("Failed to open file label %d\n", i);
            goto out;
        }

        /* Get the length of the data label */
        if ((ann_length = ANannlen(ann_id)) == FAIL) {
            printf("Failed to get length of label %d\n", i);
            goto out;
        }

        /* Allocate space for the buffer to hold the data label text */
        ann_buf = malloc((size_t)(ann_length + 1) * sizeof(char));
        if (ann_buf == NULL) {
            printf("Not enough memory!\n");
            exit(-1);
        }

        /*
         * Read and display the file label.  Note that the size of the buffer,
         * i.e., the third parameter, is 1 character more than the length of
         * the data label; that is for the null character.  It is not the case
         * when a description is retrieved because the description does not
         * necessarily end with a null character.
         *
         */
        if (ANreadann(ann_id, ann_buf, ann_length + 1) == FAIL) {
            printf("Could not read AN\n");
            goto out;
        }

        /* Create the file label */
        if ((file_label_id = ANcreatef(an_out, AN_FILE_LABEL)) == FAIL) {
            printf("Could not create file label\n");
            goto out;
        }

        /* Write the annotations  */
        if (ANwriteann(file_label_id, ann_buf, ann_length) == FAIL) {
            printf("Failed to write file label %d\n", i);
            goto out;
        }

        /* Terminate access to the current data label */
        if (ANendaccess(ann_id) == FAIL || ANendaccess(file_label_id) == FAIL) {
            printf("Could not end AN\n");
            goto out;
        }
        ann_id        = -1;
        file_label_id = -1;

        /* Free the space allocated for the annotation buffer */
        HDfreenclear(ann_buf);
    }

    /*-------------------------------------------------------------------------
     * AN_FILE_DESC
     *-------------------------------------------------------------------------
     */

    for (i = 0; i < n_file_descs; i++) {
        /* Get the identifier of the current data label */
        if ((ann_id = ANselect(an_id, i, AN_FILE_DESC)) == FAIL) {
            printf("Failed to open file description %d\n", i);
            goto out;
        }

        /* Get the length of the data label */
        if ((ann_length = ANannlen(ann_id)) == FAIL) {
            printf("Failed to get length of label %d\n", i);
            goto out;
        }

        /* Allocate space for the buffer to hold the data label text */
        ann_buf = malloc((size_t)(ann_length + 1) * sizeof(char));
        if (ann_buf == NULL) {
            printf("Not enough memory!\n");
            exit(-1);
        }

        if (ANreadann(ann_id, ann_buf, ann_length + 1) == FAIL) {
            printf("Could not read AN\n");
            goto out;
        }

        /* Create the label */
        if ((file_desc_id = ANcreatef(an_out, AN_FILE_DESC)) == FAIL) {
            printf("Could not create file description\n");
            goto out;
        }

        /* Write the annotations  */
        if (ANwriteann(file_desc_id, ann_buf, ann_length) == FAIL) {
            printf("Failed to write file description %d\n", i);
            goto out;
        }

        /* Terminate access to the current data label */
        if (ANendaccess(ann_id) == FAIL || ANendaccess(file_desc_id) == FAIL) {
            printf("Could not read AN\n");
            goto out;
        }
        ann_id       = -1;
        file_desc_id = -1;

        /* Free the space allocated for the annotation buffer */
        HDfreenclear(ann_buf);
    }

    /* Terminate access to the AN interface */
    if (ANend(an_id) == FAIL || ANend(an_out) == FAIL) {
        printf("Could not end AN\n");
        goto out;
    }
    an_id  = -1;
    an_out = -1;

    return SUCCEED;

out:
    if (ann_id != -1)
        ANendaccess(ann_id);
    if (file_desc_id != -1)
        ANendaccess(file_desc_id);
    if (file_label_id != -1)
        ANendaccess(file_desc_id);
    if (an_id != -1)
        ANend(an_id);
    if (an_id != -1)
        ANend(an_out);
    free(ann_buf);

    return FAIL;
}

/*-------------------------------------------------------------------------
 * Function: list_pal
 *
 * Purpose: list/copy lone palettes
 *
 * Return: SUCCEED, FAIL
 *
 *-------------------------------------------------------------------------
 */
int
list_pal(const char *infname, const char *outfname, list_table_t *list_tbl, options_t *options)
{
    uint8  palette_data[256 * 3];
    int    nPals, j;
    uint16 ref;

    if (options->trip == 0) {
        return SUCCEED;
    }

    DFPrestart();

    if ((nPals = DFPnpals(infname)) == FAIL) {
        printf("Failed to get palettes in <%s>\n", infname);
        return FAIL;
    }

    for (j = 0; j < nPals; j++) {
        if (DFPgetpal(infname, (void *)palette_data) == FAIL) {
            printf("Failed to read palette <%d> in <%s>\n", j, infname);
            return FAIL;
        }

        ref = DFPlastref();

        /* check if already inserted in image */
        if (list_table_search(list_tbl, DFTAG_IP8, ref) >= 0) {
            continue;
        }

        if (DFPaddpal(outfname, palette_data) == FAIL) {
            printf("Failed to write palette in <%s>\n", outfname);
            return FAIL;
        }
    }

    return SUCCEED;
}
